Epidemic forecasting in Python¶
Welcome to the epifx documentation. This package uses a bootstrap particle filter to generate influenza epidemic forecasts from mechanistic infection models.
Installation¶
Ensure that pypfilt is already installed, then clone the epifx repository
and install it a Virtual Environment (here, called
venv-pypfilt
):
# Activate the virtual environment.
source venv-pypfilt/bin/activate
# Clone the epifx repository.
git clone https://bitbucket.org/robmoss/epidemic-forecasting-for-python.git
cd epidemic-forecasting-for-python
# Install epifx in the virtual environment.
python setup.py install
If you are not using a virtual environment, and you don’t have permission to install epifx system-wide, you can install the package locally:
# Clone the epifx repository.
git clone https://bitbucket.org/robmoss/epidemic-forecasting-for-python.git
cd epidemic-forecasting-for-python
# Install epifx in the user's "site-packages" directory.
python setup.py install --user
User Documentation¶
- Home
- Getting Started
- Observation Models
- Change Log
- 0.4.3 (2016-09-16)
- 0.4.2 (2016-06-16)
- 0.4.1 (2016-04-22)
- 0.4.0 (2016-04-22)
- 0.3.1 (2016-02-25)
- 0.3.0 (2016-02-23)
- 0.2.0 (2015-11-17)
- 0.1.10 (2015-07-09)
- 0.1.9 (2015-07-06)
- 0.1.8 (2015-06-18)
- 0.1.7 (2015-06-18)
- 0.1.6 (2015-06-08)
- 0.1.5 (2015-06-04)
- 0.1.4 (2015-06-03)
- 0.1.3 (2015-06-01)
- 0.1.2 (2015-06-01)
- 0.1.1 (2015-05-29)
- 0.1.0 (2015-05-29)